Protein ZmC3H9 | |
---|---|
Information | |
TF Name: | ZmC3H9 |
Species: | Maize |
TF Family: | C3H |
Gene Name(Synonym): | C3H9 |
Uniprot ID: | K7V7P1 |
ZmC3H9 is a protein in the C3H family.
Overview of domains present in v5 transcripts | |||
---|---|---|---|
PF00642 | PF18044 | PF18345 | |
Zm00001eb359300_T002 | |||
Zm00001eb359300_T001 |
Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
---|---|---|---|---|---|
Zm00001d011470 | DAPseq | sequence | fimo | position | |
Zm00001d011470 | DAPseq | sequence | fimo | position | |
Zm00001d011470 | ChIPseq | sequence | fimo | position | |
Zm00001d011470 | PChIPseq | sequence | fimo | position |
MQEALVSPANAGRLRFRSALELKPFAFGDQRLASPRYLNLNLNLGGADDALFRCSSPTFSPSFGFSSSPSPLATSSVSLS
PTSSASLADDGCDGAGTDADADAATGHTLRLARLALQYQEVADRYELCLARLADAADDAAALRRENAELRNANADLTRRL
ALLSGIGKQVAAAAAAAEEARRLRFGEPKAVPAAKDCATEKPAVLPPKSISVRSIDFLLKMNQPKQVQPPATTPAASNRK
HRASNPTKPSSRVYKGNGGEKKDEELPKEQHAAGGVELEVFNQGMLKTELCNKWEETGACPYGDQCQFAHGVAELRPVIR
HPRYKTQVCRMVLAGEVCPYGHRCHFRHTLTPAERLHLACP
MQEALVSPANAGRLRFRSALELKPFAFGDQRLASPRYLNLNLNLGGADDALFRCSSPTFSPSFGFSSSPSPLATSSVSLS
PTSSASLADDGCDGAGTDADADAATGHTLRLARLALQYQEVADRYELCLARLADAADDAAALRRENAELRNANADLTRRL
ALLSGIGKQVAAAAAAAEEARRLRFGEPKAVPAAKDCATEKPAVLPPKSISVRSIDFLLKMNQPKQVQPPATTPAASNRK
HRASNPTKPSSRVYKGNGGEKKDEELPKEQHAAGGVELEVFNQGMLKTELCNKWEETGACPYGDQCQFAHGVAELRPVIR
HPRYKTQVCRMVLAGEVCPYGHRCHFRHTLTPAERLHLACP
MQEALVSPANAGRLRFRSALELKPFAFGDQRLASPRYLNLNLNLGGADDALFRCSSPTFSPSFGFSSSPSPLATSSVSLS
PTSSASLADDGCDGAGTDADADAATGHTLRLARLALQYQEVADRYELCLARLADAADDAAALRRENAELRNANADLTRRL
ALLSGIGKQVAAAAAAAEEARRLRFGEPKAVPAAKDCATEKPAVLPPKSISVRSIDFLLKMNQPKQVQPPATTPAASNRK
HRASNPTKPSSRVYKGNGGEKKDEELPKEQHAAGGVELEVFNQGMLKTELCNKWEETGACPYGDQCQFAHGVAELRPVIR
HPRYKTQVCRMVLAGEVCPYGHRCHFRHTLTPAERLHLACP
MQEALVSPANAGRLRFRSALELKPFAFGDQRLASPRYLNLNLNLGGADDALFRCSSPTFSPSFGFSSSPSPLATSSVSLS
PTSSASLADDGCDGAGTDADADAATGHTLRLARLALQYQEVADRYELCLARLADAADDAAALRRENAELRNANADLTRRL
ALLSGIGKQVAAAAAAAEEARRLRFGEPKAVPAAKDCATEKPAVLPPKSISVRSIDFLLKMNQPKQVQPPATTPAASNRK
HRASNPTKPSSRVYKGNGGEKKDEELPKEQHAAGGVELEVFNQGMLKTELCNKWEETGACPYGDQCQFAHGVAELRPVIR
HPRYKTQVCRMVLAGEVCPYGHRCHFRHTLTPAERLHLACP
MQEALVSPANAGRLRFRSALELKPFAFGDQRLASPRYLNLNLNLGGADDALFRCSSPTFSPSFGFSSSPSPLATSSVSLS
PTSSASLADDGCDGAGTDADADAATGHTLRLARLALQYQEVADRYELCLARLADAADDAAALRRENAELRNANADLTRRL
ALLSGIGKQVAAAAAAAEEARRLRFGEPKAVPAAKDCATEKPAVLPPKSISVRSIDFLLKMNQPKQVQPPATTPAASNRK
HRASNPTKPSSRVYKGNGGEKKDEELPKEQHAAGGVELEVFNQGMLKTELCNKWEETGACPYGDQCQFAHGVAELRPVIR
HPRYKTQVCRMVLAGEVCPYGHRCHFRHTLTPAERLHLACP
MQEALVSPANAGRLRFRSALELKPFAFGDQRLASPRYLNLNLNLGGADDALFRCSSPTFSPSFGFSSSPSPLATSSVSLS
PTSSASLADDGCDGAGTDADADAATGHTLRLARLALQYQEVADRYELCLARLADAADDAAALRRENAELRNANADLTRRL
ALLSGIGKQVAAAAAAAEEARRLRFGEPKAVPAAKDCATEKPAVLPPKSISVRSIDFLLKMNQPKQVQPPATTPAASNRK
HRASNPTKPSSRVYKGNGGEKKDEELPKEQHAAGGVELEVFNQGMLKTELCNKWEETGACPYGDQCQFAHGVAELRPVIR
HPRYKTQVCRMVLAGEVCPYGHRCHFRHTLTPAERLHLACP
MQEALVSPANAGRLRFRSALELKPFAFGDQRLASPRYLNLNLNLGGADDALFRCSSPTFSPSFGFSSSPSPLATSSVSLS
PTSSASLADDGCDGAGTDADADAATGHTLRLARLALQYQEVADRYELCLARLADAADDAAALRRENAELRNANADLTRRL
ALLSGIGKQVAAAAAAAEEARRLRFGEPKAVPAAKDCATEKPAVLPPKSISVRSIDFLLKMNQPKQVQPPATTPAASNRK
HRASNPTKPSSRVYKGNGGEKKDEELPKEQHAAGGVELEVFNQGMLKTELCNKWEETGACPYGDQCQFAHGVAELRPVIR
HPRYKTQVCRMVLAGEVCPYGHRCHFRHTLTPAERLHLACP
MQEALVSPANAGRLRFRSALELKPFAFGDQRLASPRYLNLNLNLGGADDALFRCSSPTFSPSFGFSSSPSPLATSSVSLS
PTSSASLADDGCDGAGTDADADAATGHTLRLARLALQYQEVADRYELCLARLADAADDAAALRRENAELRNANADLTRRL
ALLSGIGKQVAAAAAAAEEARRLRFGEPKAVPAAKDCATEKPAVLPPKSISVRSIDFLLKMNQPKQVQPPATTPAASNRK
HRASNPTKPSSRVYKGNGGEKKDEELPKEQHAAGGVELEVFNQGMLKTELCNKWEETGACPYGDQCQFAHGVAELRPVIR
HPRYKTQVCRMVLAGEVCPYGHRCHFRHTLTPAERLHLACP
MQEALVSPANAGRLRFRSALELKPFAFGDQRLASPRYLNLNLNLGGADDALFRCSSPTFSPSFGFSSSPSPLATSSVSLS
PTSSASLADDGCDGAGTDADADAATGHTLRLARLALQYQEVADRYELCLARLADAADDAAALRRENAELRNANADLTRRL
ALLSGIGKQVAAAAAAAEEARRLRFGEPKAVPAAKDCATEKPAVLPPKSISVRSIDFLLKMNQPKQVQPPATTPAASNRK
HRASNPTKPSSRVYKGNGGEKKDEELPKEQHAAGGVELEVFNQGMLKTELCNKWEETGACPYGDQCQFAHGVAELRPVIR
HPRYKTQVCRMVLAGEVCPYGHRCHFRHTLTPAERLHLACP
MQEALVSPANAGRLRFRSALELKPFAFGDQRLASPRYLNLNLNLGGADDALFRCSSPTFSPSFGFSSSPSPLATSSVSLS
PTSSASLADDGCDGAGTDADADAATGHTLRLARLALQYQEVADRYELCLARLADAADDAAALRRENAELRNANADLTRRL
ALLSGIGKQVAAAAAAAEEARRLRFGEPKAVPAAKDCATEKPAVLPPKSISVRSIDFLLKMNQPKQVQPPATTPAASNRK
HRASNPTKPSSRVYKGNGGEKKDEELPKEQHAAGGVELEVFNQGMLKTELCNKWEETGACPYGDQCQFAHGVAELRPVIR
HPRYKTQVCRMVLAGEVCPYGHRCHFRHTLTPAERLHLACP
Secondary Structure Color Code | |
---|---|
BEND | region with high backbone curvature without specific hydrogen bonding |
HELX_LH_PP_P | left-handed polyproline helix |
HELX_RH_3T_P | right-handed 3-10 helix |
HELX_RH_AL_P | right-handed alpha helix |
HELX_RH_PI_P | right-handed pi helix |
STRN | beta strand |
TURN_TY1_P | type I turn |
UNDETERMINED | no data available |
Domains Present | |
---|---|
PF00642 |
|
PF18345 |
|
PF18044 |
|
PF00642 |
|
PF18044 |
|
PF18345 |
|
Hover here to show all domains |
CCGATGTGTTTCTTCAATCCGCAGC...
CCGATGTGTTTCTTCAATCCGCAGCTGCCTTGGAAGCCTCGACCATGCAGGAAGCTCTCGTATCTCCGGCCAATGCCGGCCGCCTTCGCTTTCGCTCGGCCTTGGAGCTCAAGCCGTTCGCCTTCGGGGACCAGCGCCTCGCCTCGCCGCGCTACCTCAACCTCAACCTCAACCTCGGCGGCGCCGATGACGCGCTGTTCCGCTGCTCGTCGCCGACGTTCAGCCCCAGCTTCGGCTTCTCCTCCTCGCCGTCGCCGCTCGCCACGTCCTCCGTCTCGCTCTCGCCGACCTCCTCCGCCTCCCTCGCCGACGACGGCTGCGACGGCGCCGGCACCGACGCCGACGCCGACGCCGCCACGGGCCACACGCTCCGGCTCGCCCGCCTCGCGCTGCAGTACCAGGAGGTGGCCGACCGCTACGAGCTCTGCCTCGCCCGCCTCGCCGACGCCGCGGACGACGCGGCGGCGCTCCGCCGCGAGAACGCCGAGCTCCGCAACGCCAACGCCGACCTCACGCGCCGCCTCGCGCTCCTCAGCGGCATTGGAAAGCAGGTCGCCGCCGCCGCCGCCGCCGCCGAGGAGGCCCGCCGGCTCCGCTTCGGGGAGCCCAAGGCCGTCCCGGCCGCCAAGGATTGCGCTACCGAGAAGCCCGCCGTGCTGCCGCCCAAGAGCATTTCCGTCCGCTCCATTGACTTCCTCCTCAAGATGAACCAGCCCAAACAGGTACAGCCCCCCGCCACCACGCCGGCCGCAAGCAACCGCAAGCATCGCGCGTCCAACCCGACCAAACCAAGCTCGCGCGTGTACAAGGGCAATGGCGGTGAAAAAAAAGACGAGGAATTACCCAAGGAGCAACACGCGGCGGGCGGCGTGGAGCTGGAGGTGTTCAACCAGGGCATGTTGAAGACGGAGCTGTGCAACAAGTGGGAGGAGACCGGGGCGTGCCCCTACGGCGACCAGTGCCAGTTCGCTCACGGCGTCGCCGAGCTCCGCCCCGTCATCCGCCACCCACGCTACAAGACCCAGGTCTGCCGCATGGTGCTCGCCGGCGAGGTCTGCCCCTACGGCCACCGCTGCCACTTCCGCCACACGCTCACCCCCGCCGAACGCCTCCACCTAGCCTGCCCTTAGCAATGGCAGGCACGCGGCAGAGCGCAGCCAAGGCCAGCCTTTCGCCGCGCTGGAACCGTTGGTTTTTGTTTCGTCTAAAGTCAGCAAGTGCAGTATGTAAATCACACGAAAAATGTATAAAAATACGAACAGCAATGTAAATAAGATACTTGCATACGATCGAGTAACACACAAAAGGTCATACTGTAATTCATAAACTAAACCTGATGGTAGGATTAGTTTTCGTGCTATGTGAATATTCATACACAAGGACAAGATTGCTCACCGTCAATCAGCTGTGGGTTATCAGGTGCTT
MQEALVSPANAGRLRFRSGLGAQAVRLRGPAPRLAALPQPQPQPRRRPMTRCSAARRRRSAPASASPPRRRRSPRPPSRS
RRPPPPPSPTTAATAPGTDADADAATGHTLRLARLALQYQEVADRYELCLARLADAADDAAALRRENAELRNANADLTRR
LALLSGIGKQVAAAAAAAEEARRLRFGEPKAVPAAKDCATEKPAVLPPKSISVRSIDFLLKMNQPKQVQPPATTPAASNR
KHRASNPTKPSSRVYKGNGGEKKDEELPKEQHAAGGVELEVFNQGMLKTELCNKWEETGACPYGDQCQFAHGVAELRPVI
RHPRYKTQVCRMVLAGEVCPYGHRCHFRHTLTPAERLHLACP
CACACAGTCAGTCGATCGTCCTCTC...
CACACAGTCAGTCGATCGTCCTCTCCAACATACCCTCTGCTTCCTGCCTTCCTCCACGAGCTGCCTTGGAAGCCTCGACCATGCAGGAAGCTCTCGTATCTCCGGCCAATGCCGGCCGCCTTCGCTTTCGCTCGGGCCTTGGAGCTCAAGCCGTTCGCCTTCGGGGACCAGCGCCTCGCCTCGCCGCGCTACCTCAACCTCAACCTCAACCTCGGCGGCGCCCGATGACGCGCTGTTCCGCTGCTCGTCGCCGACGTTCAGCCCCAGCTTCGGCTTCTCCTCCTCGCCGTCGCCGCTCGCCACGTCCTCCGTCTCGCTCTCGCCGACCTCCTCCGCCTCCCTCGCCGACGACGGCTGCGACGGCGCCCGGCACCGACGCCGACGCCGACGCCGCCACGGGCCACACGCTCCGGCTCGCCCGCCTCGCGCTGCAGTACCAGGAGGTGGCCGACCGCTACGAGCTCTGCCTCGCCCGCCTCGCCGACGCCGCGGACGACGCGGCGGCGCTCCGCCGCGAGAACGCCGAGCTCCGCAACGCCAACGCCGACCTCACGCGCCGCCTCGCGCTCCTCAGCGGCATTGGAAAGCAGGTCGCCGCCGCCGCCGCCGCCGCCGAGGAGGCCCGCCGGCTCCGCTTCGGGGAGCCCAAGGCCGTCCCGGCCGCCAAGGATTGCGCTACCGAGAAGCCCGCCGTGCTGCCGCCCAAGAGCATTTCCGTCCGCTCCATTGACTTCCTCCTCAAGATGAACCAGCCCAAACAGGTACAGCCCCCCGCCACCACGCCGGCCGCAAGCAACCGCAAGCATCGCGCGTCCAACCCGACCAAACCAAGCTCGCGCGTGTACAAGGGCAATGGCGGTGAAAAAAAAGACGAGGAATTACCCAAGGAGCAACACGCGGCGGGCGGCGTGGAGCTGGAGGTGTTCAACCAGGGCATGTTGAAGACGGAGCTGTGCAACAAGTGGGAGGAGACCGGGGCGTGCCCCTACGGCGACCAGTGCCAGTTCGCTCACGGCGTCGCCGAGCTCCGCCCCGTCATCCGCCACCCACGCTACAAGACCCAGGTCTGCCGCATGGTGCTCGCCGGCGAGGTCTGCCCCTACGGCCACCGCTGCCACTTCCGCCACACGCTCACCCCCGCCGAACGCCTCCACCTAGCCTGCCCTTAGCAATGGCAGGCACGCGGCAGAGCGCAGCCAAGGCCAGCCTTTCGCCGCGCTGGAACCGTTGGTTTTTGTTTCGTCTAAAGTCAGCAAGTGCAGTATGTAAATCACACGAAAAATGTATAAAAATACGAACAGCAATGTAAATAAGATACTTGCATACGATCGAGTAACACACAAAAGGTCATACTGTAATTCATAAACTAAACCTGATGGTAGGATTAGTTTTCGTGCTATGTGAATATTCATACACAAGGACAAGATTGCTCACCGTCAATCAGCTGTGGGTTATCAGGTGCTT
MQEALVSPANAGRLRFRSALELKPFAFGDQRLASPRYLNLNLNLGGADDALFRCSSPTFSPSFGFSSSPSPLATSSVSLS
PTSSASLADDGCDGAGTDADADAATGHTLRLARLALQYQEVADRYELCLARLADAADDAAALRRENAELRNANADLTRRL
ALLSGIGKQVAAAAAAAEEARRLRFGEPKAVPAAKDCATEKPAVLPPKSISVRSIDFLLKMNQPKQVQPPATTPAASNRK
HRASNPTKPSSRVYKGNGGEKKDEELPKEQHAAGGVELEVFNQGMLKTELCNKWEETGACPYGDQCQFAHGVAELRPVIR
HPRYKTQVCRMVLAGEVCPYGHRCHFRHTLTPAERLHLACP
CACACAGTCAGTCGATCGTCCTCTC...
CACACAGTCAGTCGATCGTCCTCTCCAACATACCCTCTGCTTCCTGCCTTCCTCCACGAGCTGCCTTGGAAGCCTCGACCATGCAGGAAGCTCTCGTATCTCCGGCCAATGCCGGCCGCCTTCGCTTTCGCTCGGCCTTGGAGCTCAAGCCGTTCGCCTTCGGGGACCAGCGCCTCGCCTCGCCGCGCTACCTCAACCTCAACCTCAACCTCGGCGGCGCCGATGACGCGCTGTTCCGCTGCTCGTCGCCGACGTTCAGCCCCAGCTTCGGCTTCTCCTCCTCGCCGTCGCCGCTCGCCACGTCCTCCGTCTCGCTCTCGCCGACCTCCTCCGCCTCCCTCGCCGACGACGGCTGCGACGGCGCCGGCACCGACGCCGACGCCGACGCCGCCACGGGCCACACGCTCCGGCTCGCCCGCCTCGCGCTGCAGTACCAGGAGGTGGCCGACCGCTACGAGCTCTGCCTCGCCCGCCTCGCCGACGCCGCGGACGACGCGGCGGCGCTCCGCCGCGAGAACGCCGAGCTCCGCAACGCCAACGCCGACCTCACGCGCCGCCTCGCGCTCCTCAGCGGCATTGGAAAGCAGGTCGCCGCCGCCGCCGCCGCCGCCGAGGAGGCCCGCCGGCTCCGCTTCGGGGAGCCCAAGGCCGTCCCGGCCGCCAAGGATTGCGCTACCGAGAAGCCCGCCGTGCTGCCGCCCAAGAGCATTTCCGTCCGCTCCATTGACTTCCTCCTCAAGATGAACCAGCCCAAACAGGTACAGCCCCCCGCCACCACGCCGGCCGCAAGCAACCGCAAGCATCGCGCGTCCAACCCGACCAAACCAAGCTCGCGCGTGTACAAGGGCAATGGCGGTGAAAAAAAAGACGAGGAATTACCCAAGGAGCAACACGCGGCGGGCGGCGTGGAGCTGGAGGTGTTCAACCAGGGCATGTTGAAGACGGAGCTGTGCAACAAGTGGGAGGAGACCGGGGCGTGCCCCTACGGCGACCAGTGCCAGTTCGCTCACGGCGTCGCCGAGCTCCGCCCCGTCATCCGCCACCCACGCTACAAGACCCAGGTCTGCCGCATGGTGCTCGCCGGCGAGGTCTGCCCCTACGGCCACCGCTGCCACTTCCGCCACACGCTCACCCCCGCCGAACGCCTCCACCTAGCCTGCCCTTAGCAATGGCAGGCACGCGGCAGAGCGCAGCCAAGGCCAGCCTTTCGCCGCGCTGGAACCGTTGGTTTTTGTTTCGTCTAAAGTCAGCAAGTGCAGTATGTAAATCACACGAAAAATGTATAAAAATACGAACAGCAATGT
MQEALVSPANAGRLRFRSALELKPFAFGDQRLASPRYLNLNLNLGGADDALFRCSSPTFSPSFGFSSSPSPLATSSVSLS
PTSSASLADDGCDGAGTDADADAATGHTLRLARLALQYQEVADRYELCLARLADAADDAAALRRENAELRNANADLTRRL
ALLSGIGKQVAAAAAAAEEARRLRFGEPKAVPAAKDCATEKPAVLPPKSISVRSIDFLLKMNQPKQVQPPATTPAASNRK
HRASNPTKPSSRVYKGNGGEKKDEELPKEQHAAGGVELEVFNQGMLKTELCNKWEETGACPYGDQCQFAHGVAELRPVIR
HPRYKTQVCRMVLAGEVCPYGHRCHFRHTLTPAERLHLACP
CACACAGTCAGTCGATCGTCCTCTC...
CACACAGTCAGTCGATCGTCCTCTCCAACATACCCTCTGCTTCCTGCCTTCCTCCACGAGCTGCCTTGGAAGCCTCGACCATGCAGGAAGCTCTCGTATCTCCGGCCAATGCCGGCCGCCTTCGCTTTCGCTCGGCCTTGGAGCTCAAGCCGTTCGCCTTCGGGGACCAGCGCCTCGCCTCGCCGCGCTACCTCAACCTCAACCTCAACCTCGGCGGCGCCGATGACGCGCTGTTCCGCTGCTCGTCGCCGACGTTCAGCCCCAGCTTCGGCTTCTCCTCCTCGCCGTCGCCGCTCGCCACGTCCTCCGTCTCGCTCTCGCCGACCTCCTCCGCCTCCCTCGCCGACGACGGCTGCGACGGCGCCGGCACCGACGCCGACGCCGACGCCGCCACGGGCCACACGCTCCGGCTCGCCCGCCTCGCGCTGCAGTACCAGGAGGTGGCCGACCGCTACGAGCTCTGCCTCGCCCGCCTCGCCGACGCCGCGGACGACGCGGCGGCGCTCCGCCGCGAGAACGCCGAGCTCCGCAACGCCAACGCCGACCTCACGCGCCGCCTCGCGCTCCTCAGCGGCATTGGAAAGCAGGTCGCCGCCGCCGCCGCCGCCGCCGAGGAGGCCCGCCGGCTCCGCTTCGGGGAGCCCAAGGCCGTCCCGGCCGCCAAGGATTGCGCTACCGAGAAGCCCGCCGTGCTGCCGCCCAAGAGCATTTCCGTCCGCTCCATTGACTTCCTCCTCAAGATGAACCAGCCCAAACAGGTACAGCCCCCCGCCACCACGCCGGCCGCAAGCAACCGCAAGCATCGCGCGTCCAACCCGACCAAACCAAGCTCGCGCGTGTACAAGGGCAATGGCGGTGAAAAAAAAGACGAGGAATTACCCAAGGAGCAACACGCGGCGGGCGGCGTGGAGCTGGAGGTGTTCAACCAGGGCATGTTGAAGACGGAGCTGTGCAACAAGTGGGAGGAGACCGGGGCGTGCCCCTACGGCGACCAGTGCCAGTTCGCTCACGGCGTCGCCGAGCTCCGCCCCGTCATCCGCCACCCACGCTACAAGACCCAGGTCTGCCGCATGGTGCTCGCCGGCGAGGTCTGCCCCTACGGCCACCGCTGCCACTTCCGCCACACGCTCACCCCCGCCGAACGCCTCCACCTAGCCTGCCCTTAGCAATGGCAGGCACGCGGCAGAGCGCAGCCAAGGCCAGCCTTTCGCCGCGCTGGAACCGTTGGTTTTTGTTTCGTCTAAAGTCAGCAAGTGCAGTATGTAAATCACACGAAAAATGTATAAAAATACGAACAGCAATGTAAATAAGATACTTGCATACGATCGAGTAACACACAAAAGGTCATACTGTAATTCATAAACTAAACCTGATGGTAGGATTAGTTTTCGTGCTATGTGAATATTCATACACAAGGACAAGATTGCTCACCGTCAATCAGCTGTGGGTTATCAGGTGCTT
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